Stem-loop rno-mir-137

Accession

MI0000910

Description

Rattus norvegicus rno-mir-137 precursor miRNA

Gene family

MIPF0000106; mir-137

Literature search

20 open access papers mention rno-mir-137
(83 sentences)

Sequence

34675 reads, 1239 reads per million, 249 experiments

ggcccucugacucucuucggugACGGGUAUUCUUGGGUGGAUAAuacggauuacguugUUAUUGCUUAAGAAUACGCGUAGucgaggagaguaccagcggca
.(((((...(((((((((((..(((.(((((((((((((.((((((((.....)).))))))))))))))))))).)))..)))))))))))...)).))).

Structure

g   -  cug           ug   G             G      -  g 
 gcc cu   acucucuucgg  ACG GUAUUCUUGGGUG AUAAua cg a
 ||| ||   |||||||||||  ||| ||||||||||||| |||||| || u
 cgg ga   ugagaggagcu  UGC CAUAAGAAUUCGU UAUUgu gc u
a   c  cca           GA   G             -      u  a 

Annotation confidence High

Genome context

chr2: 221658106-221658207 [+]

Mature rno-miR-137-5p

• Accession: MIMAT0017126
• Description: Rattus norvegicus rno-miR-137-5p mature miRNA
• Sequence: 23 - ACGGGUAUUCUUGGGUGGAUAA - 44
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-137-3p

• Accession: MIMAT0000843
• Description: Rattus norvegicus rno-miR-137-3p mature miRNA
• Sequence: 59 - UUAUUGCUUAAGAAUACGCGUAG - 81
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249