miRBase entry: rno-mir-154

Stem-loop rno-mir-154


Accession
MI0000923
Description
Rattus norvegicus rno-mir-154 precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
7 open access papers mention rno-mir-154
(12 sentences)

Sequence

14660 reads, 35 reads per million, 352 experiments
gcggugcuugaagaUAGGUUAUCCGUGUUGCCUUCGcuuuauucgugacgAAUCAUACACGGUUGACCUAUUuuucaguaccaa
..((((((.((((((((((((.((((((....(((((.........).))))....)))))).)))))))))))).))))))..

Structure
gc      u            U      UGCC    - uuu 
  ggugcu gaagaUAGGUUA CCGUGU    UUCG c   a
  |||||| |||||||||||| ||||||    |||| |   u
  ccauga uuuUUAUCCAGU GGCACA    AAgc g   u
aa      c            U      UACU    a ugc 


Annotation confidence High
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Genome context
chr6: 133888586-133888669 [+]
Clustered miRNAs
15 other miRNAs are < 10 kb from rno-mir-154
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-154-5p

Accession MIMAT0000856
Description Rattus norvegicus rno-miR-154-5p mature miRNA
Sequence 15 - UAGGUUAUCCGUGUUGCCUUCG - 36
Evidence experimental
cloned [1-2], SOLiD [3]

Mature rno-miR-154-3p

Accession MIMAT0017136
Description Rattus norvegicus rno-miR-154-3p mature miRNA
Sequence 51 - AAUCAUACACGGUUGACCUAUU - 72
Evidence experimental
SOLiD [3]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  3. PubMed ID: 15345052
    Microarray analysis of microRNA expression in the developing mammalian brain
    Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
    Genome Biol (2004) 5:R68