miRBase entry: rno-mir-181a-2

Stem-loop rno-mir-181a-2


Accession
MI0000925
Description
Rattus norvegicus rno-mir-181a-2 precursor miRNA
Gene family
MIPF0000007; mir-181

Literature search
61 open access papers mention rno-mir-181a-2
(294 sentences)

Sequence

36194714 reads, 27116 reads per million, 509 experiments
agaugggcaaccaaggcagccuuaagaggacuccauggAACAUUCAACGCUGUCGGUGAGUuugggauucaaaaacaaaaaaaACCACCAACCGUUGACUGUaccuugggauucuua
....((((..(....)..))))...(((((.((((.((.(((.((((((..((.((((.((((..................)))))))).)))))))).))).)).)))).))))).

Structure
agaugggcaaccaaggcagccuuaa     c    u  A   U      CU  C    A    gggauuca 
                         gagga ucca gg ACA UCAACG  GU GGUG GUuu        a
                         ||||| |||| || ||| ||||||  || |||| ||||         
                         uucuu gggu cc UGU AGUUGC  CA CCAC CAaa        a
------------------------a     a    u  a   C      --  A    -    aaaaacaa 


Annotation confidence High
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Genome context
chr3: 23150352-23150468 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-181a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-181a-5p

Accession MIMAT0000858
Description Rattus norvegicus rno-miR-181a-5p mature miRNA
Sequence 39 - AACAUUCAACGCUGUCGGUGAGU - 61
Evidence experimental
cloned [3-4], SOLiD [4]

Mature rno-miR-181a-2-3p

Accession MIMAT0017138
Description Rattus norvegicus rno-miR-181a-2-3p mature miRNA
Sequence 84 - ACCACCAACCGUUGACUGU - 102
Evidence experimental
SOLiD [4]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 14691248
    Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
    "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
    "Proc Natl Acad Sci U S A (2004) 101:360-365

  3. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  4. PubMed ID: 17805466
    Cloning and identification of novel microRNAs from rat hippocampus
    "He X, Zhang Q, Liu Y, Pan X"
    "Acta Biochim Biophys Sin (Shanghai) (2007) 39:708-714