miRBase entry: rno-mir-181b-1

Stem-loop rno-mir-181b-1


Accession
MI0000926
Description
Rattus norvegicus rno-mir-181b-1 precursor miRNA
Gene family
MIPF0000007; mir-181

Literature search
32 open access papers mention rno-mir-181b-1
(188 sentences)

Sequence

1768724 reads, 1521 reads per million, 506 experiments
ccugugcagagaugauguuuacaaaggucacaaucAACAUUCAUUGCUGUCGGUGGGUugaacuguguagaaaagCUCACUGAACAAUGAAUGCAAcuguggccccgcuu
..((((((.......)))..)))..(((((((.....(((((((((...((((((((((...((....))...)))))))))).)))))))))....)))))))......

Structure
ccugugcagagaugauguuuacaaa       aucAA         CUG          gaa  g 
                         ggucaca     CAUUCAUUG   UCGGUGGGUu   cu u
                         |||||||     |||||||||   ||||||||||   ||  
                         ccggugu     GUAAGUAAC   AGUCACUCga   ga g
-------------------uucgcc       -cAAC         --A          aaa  u 


Annotation confidence High
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Genome context
chr13: 54952903-54953012 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from rno-mir-181b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-181b-5p

Accession MIMAT0000859
Description Rattus norvegicus rno-miR-181b-5p mature miRNA
Sequence 36 - AACAUUCAUUGCUGUCGGUGGGU - 58
Evidence experimental
cloned [1-2], SOLiD [3]

Mature rno-miR-181b-1-3p

Accession MIMAT0017139
Description Rattus norvegicus rno-miR-181b-1-3p mature miRNA
Sequence 76 - CUCACUGAACAAUGAAUGCAA - 96
Evidence experimental
SOLiD [3]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  3. PubMed ID: 17805466
    Cloning and identification of novel microRNAs from rat hippocampus
    "He X, Zhang Q, Liu Y, Pan X"
    "Acta Biochim Biophys Sin (Shanghai) (2007) 39:708-714