miRBase entry: rno-mir-181b-2

Stem-loop rno-mir-181b-2


Accession
MI0000927
Description
Rattus norvegicus rno-mir-181b-2 precursor miRNA
Gene family
MIPF0000007; mir-181

Literature search
32 open access papers mention rno-mir-181b-2
(186 sentences)

Sequence

1798993 reads, 1482 reads per million, 505 experiments
ugauggcugcacucAACAUUCAUUGCUGUCGGUGGGUuugaaugucaaccaaCUCACUGGUCAAUGAAUGCAAAcugcgggccaaaaa
...((((((((.....(((((((((...(((((((((((((...)))...)))))))))).))))))))).....))).)))))....

Structure
-uga     -   cucAA         CUG          ---   a 
    uggcu gca     CAUUCAUUG   UCGGUGGGUu   uga  
    ||||| |||     |||||||||   ||||||||||   ||| u
    accgg cgu     GUAAGUAAC   GGUCACUCaa   acu  
aaaa     g   cAAAC         --U          cca   g 


Annotation confidence High
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Genome context
chr3: 23151455-23151542 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-181b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-181b-5p

Accession MIMAT0000859
Description Rattus norvegicus rno-miR-181b-5p mature miRNA
Sequence 15 - AACAUUCAUUGCUGUCGGUGGGU - 37
Evidence experimental
cloned [1-2], SOLiD [3]

Mature rno-miR-181b-2-3p

Accession MIMAT0017140
Description Rattus norvegicus rno-miR-181b-2-3p mature miRNA
Sequence 53 - CUCACUGGUCAAUGAAUGCAAA - 74
Evidence experimental
SOLiD [3]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  3. PubMed ID: 17805466
    Cloning and identification of novel microRNAs from rat hippocampus
    "He X, Zhang Q, Liu Y, Pan X"
    "Acta Biochim Biophys Sin (Shanghai) (2007) 39:708-714