Stem-loop rno-mir-200c

Accession

MI0000942

Description

Rattus norvegicus rno-mir-200c precursor miRNA

Gene family

MIPF0000019; mir-8

Literature search

64 open access papers mention rno-mir-200c
(427 sentences)

Sequence

117544 reads, 287 reads per million, 415 experiments

cccuCGUCUUACCCAGCAGUGUUUGggugcugguugggagucucUAAUACUGCCGGGUAAUGAUGgagg
.(((((((((((((.((((((((.(((.(((.......)))))).)))))))).)))))).))).))))

Structure

c    -   -      A        U   u   gg 
 ccuC GUC UUACCC GCAGUGUU Ggg gcu  u
 |||| ||| |||||| |||||||| ||| |||  u
 ggag UAG AAUGGG CGUCAUAA cuc uga  g
-    G   U      C        U   -   gg 

Annotation confidence High

Genome context

chr4: 157236786-157236854 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-200c

Mature rno-miR-200c-5p

• Accession: MIMAT0017150
• Description: Rattus norvegicus rno-miR-200c-5p mature miRNA
• Sequence: 5 - CGUCUUACCCAGCAGUGUUUG - 25
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-200c-3p

• Accession: MIMAT0000873
• Description: Rattus norvegicus rno-miR-200c-3p mature miRNA
• Sequence: 45 - UAAUACUGCCGGGUAAUGAUG - 65
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 14573789
   Reduced accumulation of specific microRNAs in colorectal neoplasia
   "Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ"
   "Mol Cancer Res (2003) 1:882-891


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249