miRBase entry: rno-mir-204

Stem-loop rno-mir-204


Accession
MI0000946
Description
Rattus norvegicus rno-mir-204 precursor miRNA
Gene family
MIPF0000042; mir-204

Literature search
38 open access papers mention rno-mir-204
(267 sentences)

Sequence

1427239 reads, 1319 reads per million, 491 experiments
ggcuacagcccuucuucaugugacucguggacUUCCCUUUGUCAUCCUAUGCCUgagaauauaugaaggagGCUGGGAAGGCAAAGGGACGUUcaauugucaucacuggc
(((....))).....(((((((((...(((((.((((((((((.(((((.((((...............))))))))).)))))))))).)))))...)))).)).))).

Structure
ggcuacagcccuucu   -  -    ucg     U          A     U    gagaau 
               uca ug ugac   uggac UCCCUUUGUC UCCUA GCCU      a
               ||| || ||||   ||||| |||||||||| ||||| ||||      u
               ggu ac acug   acUUG AGGGAAACGG AGGGU CGga      a
--------------c   c  u    uua     C          A     -    ggaagu 


Annotation confidence High
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Genome context
chr1: 240403000-240403109 [+]

Database links

Mature rno-miR-204-5p

Accession MIMAT0000877
Description Rattus norvegicus rno-miR-204-5p mature miRNA
Sequence 33 - UUCCCUUUGUCAUCCUAUGCCU - 54
Evidence experimental
cloned [1], SOLiD [2]

Mature rno-miR-204-3p

Accession MIMAT0004739
Description Rattus norvegicus rno-miR-204-3p mature miRNA
Sequence 72 - GCUGGGAAGGCAAAGGGACGUU - 93
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249