Stem-loop sequence rno-mir-208a

Accession

MI0000949 (change log)

Previous IDs

rno-mir-208

Description

Rattus norvegicus miR-208 stem-loop

Gene family

MIPF0000178; mir-208

Literature search

48 open access papers mention rno-mir-208a
(189 sentences)

Stem-loop

   u         g  ug       g  c  gg      c  a 
5'  uccuuugac gg  agcuuuu gc cg  uuauac ug c
    ||||||||| ||  ||||||| || ||  |||||| || u
3'  aggagacug uu  ucgaaaa cg gc  aauaug ac c
   g         g  gu       a  a  ag      c  u 

Deep sequencing

27049 reads, 55.7 reads per million, 97 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr15: 33613451-33613533 [-]
• Overlapping transcripts:

  sense

  ENSRNOT00000023302 ; Myh6-201; intron 28

  antisense

  ENSRNOT00000053706 ; Mir3546-201; exon 1

Clustered miRNAs

< 10kb from rno-mir-208a

• rno-mir-208a: chr15: 33613451-33613533 [-]
• rno-mir-3546: chr15: 33613435-33613550 [+]

Database links

• EntrezGene:Mir208
• miRBase Tracker:MI0000949

Mature sequence rno-miR-208a-5p

• Accession: MIMAT0017155
• Previous IDs: rno-miR-208*
• Sequence: 15 - gagcuuuuggcccggguuauac - 36
• Deep sequencing: 3378 reads, 31 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-208a-5p
  • miRDB:rno-miR-208a-5p

Mature sequence rno-miR-208a-3p

• Accession: MIMAT0000880
• Previous IDs: rno-miR-208
• Sequence: 50 - auaagacgagcaaaaagc - 67
• Deep sequencing: 23664 reads, 101 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-208a-3p
  • miRDB:rno-miR-208a-3p
  • microrna.org:rno-miR-208a-3p

References

1. PMID:12554859 "New microRNAs from mouse and human" Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T RNA. 9:175-179(2003).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).