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miRBase |
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Stem-loop sequence rno-mir-208a |
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Accession | MI0000949 (change log) | |||||
Previous IDs | rno-mir-208 | |||||
Description | Rattus norvegicus miR-208 stem-loop | |||||
Gene family | MIPF0000178; mir-208 | |||||
Literature search |
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48 open access papers mention rno-mir-208a | |||||
Stem-loop |
u g ug g c gg c a 5' uccuuugac gg agcuuuu gc cg uuauac ug c ||||||||| || ||||||| || || |||||| || u 3' aggagacug uu ucgaaaa cg gc aauaug ac c g g gu a a ag c u |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Clustered miRNAs |
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Database links |
Mature sequence rno-miR-208a-5p |
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Accession | MIMAT0017155 |
Previous IDs | rno-miR-208* |
Sequence |
15 - gagcuuuuggcccggguuauac - 36 |
Deep sequencing | 3378 reads, 31 experiments |
Evidence | experimental; SOLiD [2] |
Predicted targets |
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Mature sequence rno-miR-208a-3p |
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Accession | MIMAT0000880 |
Previous IDs | rno-miR-208 |
Sequence |
50 - auaagacgagcaaaaagc - 67 |
Deep sequencing | 23664 reads, 101 experiments |
Evidence | experimental; SOLiD [2] |
Predicted targets |
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References |
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1 |
PMID:12554859
"New microRNAs from mouse and human"
RNA. 9:175-179(2003).
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2 |
PMID:20403161
"Small RNA expression and strain specificity in the rat"
BMC Genomics. 11:249(2010).
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