miRBase entry: rno-mir-211

Stem-loop rno-mir-211


Accession
MI0000951
Description
Rattus norvegicus rno-mir-211 precursor miRNA
Gene family
MIPF0000042; mir-204

Literature search
4 open access papers mention rno-mir-211
(8 sentences)

Sequence

2955 reads, 13 reads per million, 250 experiments
cagcuuggaccugugaccucugggcUUCCCUUUGUCAUCCUUUGCCUaggccucugaguggGGCAAGGACAGCAAAGGGGGgcucaguggucaccucuacugcaga
..((.((((...((((((.((((((((((((((((..(((((.((((..((......)).)))))))))..)))))))))))))))).)))))).))))..))...

Structure
-ca  -u    ccu      u                CA     U    ag  cu 
   gc  ugga   gugacc cugggcUUCCCUUUGU  UCCUU GCCU  gc  c
   ||  ||||   |||||| ||||||||||||||||  ||||| ||||  ||   
   cg  aucu   cacugg gacucgGGGGGAAACG  AGGAA CGGg  ug  u
aga  uc    --c      u                AC     -    -g  ag 


Annotation confidence Not enough data
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Genome context
chr1: 125042119-125042224 [+]

Database links

Mature rno-miR-211-5p

Accession MIMAT0000882
Description Rattus norvegicus rno-miR-211-5p mature miRNA
Sequence 26 - UUCCCUUUGUCAUCCUUUGCCU - 47
Evidence experimental
SOLiD [2]

Mature rno-miR-211-3p

Accession MIMAT0017157
Description Rattus norvegicus rno-miR-211-3p mature miRNA
Sequence 62 - GGCAAGGACAGCAAAGGGGG - 81
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 12624257
    Vertebrate microRNA genes
    "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
    "Science (2003) 299:1540

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249