miRBase entry: rno-mir-212

Stem-loop rno-mir-212


Accession
MI0000952
Description
Rattus norvegicus rno-mir-212 precursor miRNA
Gene family
MIPF0000065; mir-132

Literature search
35 open access papers mention rno-mir-212
(302 sentences)

Sequence

103718 reads, 1811 reads per million, 427 experiments
cgggauauccccgcccgggcagcgcgccggcACCUUGGCUCUAGACUGCUUACUGcccgggccgcccucagUAACAGUCUCCAGUCACGGCCAccgacgccuggccccgcc
((((.....))))...((((((.(((.(((..((.(((((..((((((.((((((...(((...))).))))))))))))..))))).))...))).))))).))))....

Structure
cgggauauccccgccc    -  c   c   -cA  U     CU      C      ccc   c 
                gggc ag gcg cgg   CC UGGCU  AGACUG UUACUG   ggg  
                |||| || ||| |||   || |||||  |||||| ||||||   ||| c
                cccg uc cgc gcc   GG ACUGA  UCUGAC AAUgac   ccc  
------------ccgc    g  -   a   ACC  C     CC      -      --u   g 


Annotation confidence High
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Genome context
chr10: 62014702-62014812 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-212
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-212-5p

Accession MIMAT0017158
Description Rattus norvegicus rno-miR-212-5p mature miRNA
Sequence 32 - ACCUUGGCUCUAGACUGCUUACUG - 55
Evidence experimental
SOLiD [2]

Mature rno-miR-212-3p

Accession MIMAT0000883
Description Rattus norvegicus rno-miR-212-3p mature miRNA
Sequence 72 - UAACAGUCUCCAGUCACGGCCA - 93
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249