Stem-loop rno-mir-212

Accession

MI0000952

Description

Rattus norvegicus rno-mir-212 precursor miRNA

Literature search

35 open access papers mention rno-mir-212
(302 sentences)

Sequence

103717 reads, 88 reads per million, 427 experiments

cgggauauccccgcccgggcagcgcgccggcACCUUGGCUCUAGACUGCUUACUGcccgggccgcccucagUAACAGUCUCCAGUCACGGCCAccgacgccuggccccgcc
((((.....))))...((((((.(((.(((..((.(((((..((((((.((((((...(((...))).))))))))))))..))))).))...))).))))).))))....

Structure

cgggauauccccgccc    -  c   c   -cA  U     CU      C      ccc   c 
                gggc ag gcg cgg   CC UGGCU  AGACUG UUACUG   ggg  
                |||| || ||| |||   || |||||  |||||| ||||||   ||| c
                cccg uc cgc gcc   GG ACUGA  UCUGAC AAUgac   ccc  
------------ccgc    g  -   a   ACC  C     CC      -      --u   g 

Annotation confidence Medium

Genome context

chr10: 62014702-62014812 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-212

Mature rno-miR-212-5p

• Accession: MIMAT0017158
• Description: Rattus norvegicus rno-miR-212-5p mature miRNA
• Sequence: 32 - ACCUUGGCUCUAGACUGCUUACUG - 55
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-212-3p

• Accession: MIMAT0000883
• Description: Rattus norvegicus rno-miR-212-3p mature miRNA
• Sequence: 72 - UAACAGUCUCCAGUCACGGCCA - 93
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249