Stem-loop rno-mir-216a

Accession

MI0000955

Description

Rattus norvegicus rno-mir-216a precursor miRNA

Literature search

13 open access papers mention rno-mir-216a
(40 sentences)

Sequence

188506 reads, 543 reads per million, 229 experiments

guuagcuaugaguuaguuUAAUCUCAGCUGGCAACUGUGAgaugucccuaucauuccuCACAGUGGUCUCUGGGAUUAUGcuaaacagagcaauuuccuugaccuc
....(((.((..(((((.(((((((((..(((.(((((((((((.......)))..)))))))).))).))))))))).))))).)).)))...............

Structure

-----------guua   a  ag     u         CU   A        --   uc 
               gcu ug  uuagu UAAUCUCAG  GGC ACUGUGAg  aug  c
               ||| ||  ||||| |||||||||  ||| ||||||||  |||  c
               cga ac  aaucG AUUAGGGUC  CUG UGACACuc  uac  u
cuccaguuccuuuaa   g  -a     U         -U   G        cu   ua 

Annotation confidence Medium

Genome context

chr14: 113112129-113112234 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-216a

Mature rno-miR-216a-5p

• Accession: MIMAT0000886
• Description: Rattus norvegicus rno-miR-216a-5p mature miRNA
• Sequence: 19 - UAAUCUCAGCUGGCAACUGUGA - 40
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-216a-3p

• Accession: MIMAT0017160
• Description: Rattus norvegicus rno-miR-216a-3p mature miRNA
• Sequence: 59 - CACAGUGGUCUCUGGGAUUAUG - 80
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249