miRBase entry: rno-mir-216a

Stem-loop rno-mir-216a


Accession
MI0000955
Description
Rattus norvegicus rno-mir-216a precursor miRNA
Gene family
MIPF0000054; mir-216

Literature search
13 open access papers mention rno-mir-216a
(40 sentences)

Sequence

188506 reads, 1280 reads per million, 229 experiments
guuagcuaugaguuaguuUAAUCUCAGCUGGCAACUGUGAgaugucccuaucauuccuCACAGUGGUCUCUGGGAUUAUGcuaaacagagcaauuuccuugaccuc
....(((.((..(((((.(((((((((..(((.(((((((((((.......)))..)))))))).))).))))))))).))))).)).)))...............

Structure
-----------guua   a  ag     u         CU   A        --   uc 
               gcu ug  uuagu UAAUCUCAG  GGC ACUGUGAg  aug  c
               ||| ||  ||||| |||||||||  ||| ||||||||  |||  c
               cga ac  aaucG AUUAGGGUC  CUG UGACACuc  uac  u
cuccaguuccuuuaa   g  -a     U         -U   G        cu   ua 


Annotation confidence High
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Genome context
chr14: 113112129-113112234 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-216a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-216a-5p

Accession MIMAT0000886
Description Rattus norvegicus rno-miR-216a-5p mature miRNA
Sequence 19 - UAAUCUCAGCUGGCAACUGUGA - 40
Evidence experimental
cloned [1], SOLiD [2]

Mature rno-miR-216a-3p

Accession MIMAT0017160
Description Rattus norvegicus rno-miR-216a-3p mature miRNA
Sequence 59 - CACAGUGGUCUCUGGGAUUAUG - 80
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249