miRBase entry: rno-mir-219a-1

Stem-loop rno-mir-219a-1


Accession
MI0000959
Description
Rattus norvegicus rno-mir-219a-1 precursor miRNA
Gene family
MIPF0000044; mir-219

Literature search
28 open access papers mention rno-mir-219a-1
(236 sentences)

Sequence

15223 reads, 55 reads per million, 429 experiments
cugucccgggccgcggcuccUGAUUGUCCAAACGCAAUUCUcgagucucuggcuccggccgAGAGUUGCGUCUGGACGUCCCGagccgccgcccccaaaccucgaggggg
...((((((((.(((((((..(((.(((((.((((((((((((.(((.........))))))))))))))).))))))))..))))))).))))...........)))).

Structure
cug    -----------    c       cU   U     A            a   ucu 
   uccc           gggc gcggcuc  GAU GUCCA ACGCAAUUCUcg guc   g
   ||||           |||| |||||||  ||| ||||| |||||||||||| |||   g
   gggg           cccg cgccgaG  CUG CAGGU UGCGUUGAGAgc cgg   c
--g    agcuccaaacc    c       CC   -     C            -   ccu 


Annotation confidence High
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Genome context
chr20: 3816158-3816267 [-]

Database links

Mature rno-miR-219a-5p

Accession MIMAT0000889
Description Rattus norvegicus rno-miR-219a-5p mature miRNA
Sequence 21 - UGAUUGUCCAAACGCAAUUCU - 41
Evidence experimental
cloned [1], SOLiD [2]

Mature rno-miR-219a-1-3p

Accession MIMAT0004741
Description Rattus norvegicus rno-miR-219a-1-3p mature miRNA
Sequence 62 - AGAGUUGCGUCUGGACGUCCCG - 83
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249