miRBase entry: rno-mir-219a-2

Stem-loop rno-mir-219a-2


Accession
MI0000960
Description
Rattus norvegicus rno-mir-219a-2 precursor miRNA
Gene family
MIPF0000044; mir-219

Literature search
29 open access papers mention rno-mir-219a-2
(244 sentences)

Sequence

204821 reads, 450 reads per million, 362 experiments
acucaggggcuucaccacUGAUUGUCCAAACGCAAUUCUuguacgagucugcggccaaccgAGAAUUGUGGCUGGACAUCUGUgguugagcuccgg
.....(((((((.(((((.(((.(((((..(((((((((((...(.(((...))))...)))))))))))..)))))))).))))).)))))))..

Structure
acuca       c     U   U     AA           uac a   u 
     ggggcuu accac GAU GUCCA  CGCAAUUCUug   g guc  
     ||||||| ||||| ||| |||||  |||||||||||   | ||| g
     ccucgag uggUG CUA CAGGU  GUGUUAAGAgc   c cgg  
---gg       u     U   -     CG           caa -   c 


Annotation confidence High
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Genome context
chr3: 8407430-8407525 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-219a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-219a-5p

Accession MIMAT0000889
Description Rattus norvegicus rno-miR-219a-5p mature miRNA
Sequence 19 - UGAUUGUCCAAACGCAAUUCU - 39
Evidence experimental
cloned [1], SOLiD [2]

Mature rno-miR-219a-2-3p

Accession MIMAT0005446
Description Rattus norvegicus rno-miR-219a-2-3p mature miRNA
Sequence 62 - AGAAUUGUGGCUGGACAUCUGU - 83
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249