miRBase entry: rno-mir-222

Stem-loop rno-mir-222


Accession
MI0000962
Description
Rattus norvegicus rno-mir-222 precursor miRNA
Gene family
MIPF0000051; mir-221

Literature search
44 open access papers mention rno-mir-222
(252 sentences)

Sequence

318885 reads, 276 reads per million, 491 experiments
aaggauuagggugcccucaguGGCUCAGUAGCCAGUGUAGAUccugucuuugguaaucagcAGCUACAUCUGGCUACUGGGUcucugauggcaucaucuagcu
..((((...((((((.((((.(((((((((((((((((((...(((...........)))...))))).)))))))))))))).)))).))))))))))....

Structure
--aa    uag      c    u              -     AUc   ucuu 
    ggau   ggugcc ucag GGCUCAGUAGCCAG UGUAG   cug    u
    ||||   |||||| |||| |||||||||||||| |||||   |||    g
    ucua   cuacgg aguc cUGGGUCAUCGGUC ACAUC   gac    g
ucga    ---      u    u              U     GAc   uaau 


Annotation confidence High
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Genome context
chrX: 3683919-3684021 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-222
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-222-5p

Accession MIMAT0017164
Description Rattus norvegicus rno-miR-222-5p mature miRNA
Sequence 22 - GGCUCAGUAGCCAGUGUAGAU - 42
Evidence experimental
SOLiD [2]

Mature rno-miR-222-3p

Accession MIMAT0000891
Description Rattus norvegicus rno-miR-222-3p mature miRNA
Sequence 62 - AGCUACAUCUGGCUACUGGGU - 82
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249