Stem-loop rno-mir-290

Accession

MI0000964

Description

Rattus norvegicus rno-mir-290 precursor miRNA

Gene family

MIPF0000068; mir-290

Literature search

4 open access papers mention rno-mir-290
(7 sentences)

Sequence

6 reads, 2 reads per million, 6 experiments

ucaucuugcgguUCUCAAACUAUGGGGGCAcuuuuuuuuucuuuaaaaagugccgccagguuuuagggccugccgguugag
(((.((.((((((((.(((((.(((.((((((((((........)))))))))).)))))))).)))))).)).)).))).

Structure

-   u  u  -      C     A   G          uuu 
 uca cu gc gguUCU AAACU UGG GGCAcuuuuu   u
 ||| || || |||||| ||||| ||| ||||||||||    
 agu gg cg ccggga uuugg acc ccgugaaaaa   c
g   u  c  u      u     -   g          uuu 

Annotation confidence Not enough data

Genome context

chr1: 64538705-64538785 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from rno-mir-290

Mature rno-miR-290

• Accession: MIMAT0000893
• Description: Rattus norvegicus rno-miR-290 mature miRNA
• Sequence: 13 - UCUCAAACUAUGGGGGCA - 30
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 12919684
   Embryonic stem cell-specific MicroRNAs
   "Houbaviy HB, Murray MF, Sharp PA"
   "Dev Cell (2003) 5:351-358


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249