miRBase entry: rno-mir-292

Stem-loop rno-mir-292


Accession
MI0000966
Description
Rattus norvegicus rno-mir-292 precursor miRNA
Gene family
MIPF0000068; mir-290

Literature search
3 open access papers mention rno-mir-292
(3 sentences)

Sequence

247 reads, 11 reads per million, 53 experiments
caaccugugauACUCAAACUGGGGGCUCUUUUGgguuuucuuuggaagaaAAGUGCCGCCAGGUUUUGAGUGUuaccgauug
(((.(.((((((((((((((((.(((.((((....(((((....))))))))).))).))))..)))))))))))).).)))

Structure
   c u            --    G   U    UGgg     u 
caa c gugauACUCAAA  CUGG GGC CUUU    uuuuc u
||| | ||||||||||||  |||| ||| ||||    |||||  
guu g cauUGUGAGUUU  GACC CCG GAAa    agaag u
   a c            UG    G   U    ----     g 


Annotation confidence High
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Genome context
chr1: 64538119-64538200 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from rno-mir-292
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-292-5p

Accession MIMAT0000896
Description Rattus norvegicus rno-miR-292-5p mature miRNA
Sequence 12 - ACUCAAACUGGGGGCUCUUUUG - 33
Evidence not_experimental

Mature rno-miR-292-3p

Accession MIMAT0000897
Description Rattus norvegicus rno-miR-292-3p mature miRNA
Sequence 51 - AAGUGCCGCCAGGUUUUGAGUGU - 73
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 12919684
    Embryonic stem cell-specific MicroRNAs
    "Houbaviy HB, Murray MF, Sharp PA"
    "Dev Cell (2003) 5:351-358

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249