miRBase entry: rno-mir-296

Stem-loop rno-mir-296


Accession
MI0000967
Description
Rattus norvegicus rno-mir-296 precursor miRNA
Gene family
MIPF0000159; mir-296

Literature search
16 open access papers mention rno-mir-296
(45 sentences)

Sequence

3343 reads, 6537 reads per million, 259 experiments
ggaccuuucuggAGGGCCCCCCCUCAAUCCUGUugugcucgcuucaGAGGGUUGGGUGGAGGCUCUCCugaagguguc
.((((((((.((((((((.((.(((((((((.(((.........)))))))))))).)).)))))))).))))).)))

Structure
g   -     u        C  C         G   ugc 
 gac cuuuc ggAGGGCC CC CUCAAUCCU Uug   u
 ||| ||||| |||||||| || ||||||||| |||   c
 cug ggaag CCUCUCGG GG GGGUUGGGA Gac   g
-   u     u        A  U         -   uuc 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr3: 172357490-172357567 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-296
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-296-5p

Accession MIMAT0000898
Description Rattus norvegicus rno-miR-296-5p mature miRNA
Sequence 13 - AGGGCCCCCCCUCAAUCCUGU - 33
Evidence experimental
SOLiD [2]

Mature rno-miR-296-3p

Accession MIMAT0004742
Description Rattus norvegicus rno-miR-296-3p mature miRNA
Sequence 47 - GAGGGUUGGGUGGAGGCUCUCC - 68
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249