Stem-loop rno-mir-299a

Accession

MI0000970

Description

Rattus norvegicus rno-mir-299a precursor miRNA

Gene family

MIPF0000186; mir-299

Literature search

3 open access papers mention rno-mir-299a
(5 sentences)

Sequence

11971 reads, 272 reads per million, 335 experiments

aagaaaUGGUUUACCGUCCCACAUACAUuuugaguaugUAUGUGGGACGGUAAACCGCUucuu
(((((.((((((((((((((((((((((.......)))))))))))))))))))))).)))))

Structure

     a                      uu 
aagaa UGGUUUACCGUCCCACAUACAU  u
||||| ||||||||||||||||||||||  g
uucuU GCCAAAUGGCAGGGUGUAUgua  a
     C                      ug 

Annotation confidence High

Genome context

chr6: 133859324-133859386 [+]

Clustered miRNAs

14 other miRNAs are < 10 kb from rno-mir-299a

Mature rno-miR-299a-5p

• Accession: MIMAT0000901
• Description: Rattus norvegicus rno-miR-299a-5p mature miRNA
• Sequence: 7 - UGGUUUACCGUCCCACAUACAU - 28
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-299a-3p

• Accession: MIMAT0017167
• Description: Rattus norvegicus rno-miR-299a-3p mature miRNA
• Sequence: 39 - UAUGUGGGACGGUAAACCGCU - 59
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 12919684
   Embryonic stem cell-specific MicroRNAs
   "Houbaviy HB, Murray MF, Sharp PA"
   "Dev Cell (2003) 5:351-358


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249