Stem-loop sequence osa-MIR394

Accession

MI0001027 (change log)

Description

Oryza sativa miR394 stem-loop

Gene family

MIPF0000100; MIR394

Literature search

26 open access papers mention osa-MIR394
(59 sentences)

Stem-loop

   ua   - g      -      u c           -uu     auccuca    ca 
5'   cug a aguucu uuggca u uguccaccucc   gucga       gaga  g
     ||| | |||||| |||||| | |||||||||||   |||||       ||||   
3'   gau u ucgagg aaccgu a acggguggagg   uaguu       cucu  a
   -g   g g      u      c u           uuc     gucuaua    aa 

Deep sequencing

125 reads, 100 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Comments

This sequence belongs to the miR394 family of miRNAs, which are predicted to target mRNAs coding for F-box proteins [1].

Genome context

• Coordinates (MSU7): Chr2: 27148154-27148263 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001027

Mature sequence osa-miR394

• Accession: MIMAT0000958
• Sequence: 14 - uuggcauucuguccaccucc - 33
• Deep sequencing: 123 reads, 2 experiments
• Evidence: by similarity; MI0001005
• Database links:
  • RNAcentral:URS0000359C77_39947

References

1. PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" Jones-Rhoades MW, Bartel DP Mol Cell. 14:787-799(2004).