Stem-loop sequence osa-MIR395i

AccessionMI0001033 (change log)
DescriptionOryza sativa miR395i stem-loop
Gene family MIPF0000016; MIR395
Literature search

39 open access papers mention osa-MIR395i
(167 sentences)

   guuu            u                 ------     uu     u 
5'     uaccgggaguuc cuucaagcacuucacgu      agagc  ucuau g
       |||||||||||| |||||||||||||||||      |||||  |||||  
3'     augguucucaag gggguuugugaagugua      uuucg  aggua a
   aacc            -                 acaaga     --     c 
Get sequence
Deep sequencing
47 reads, 0 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?

This sequence belongs to the miR395 family of miRNAs, which are predicted to target mRNAs coding for ATP sulphurylases [1]. Four clusters of rice miR395 genes are found on chromosomes 4, 8 and 9, and the genes have been renamed to reflect this arrangement [2].

Genome context
Coordinates (MSU7) Overlapping transcripts
Chr8: 3299319-3299417 [+]
Clustered miRNAs
< 10kb from osa-MIR395i
osa-MIR395hChr8: 3299144-3299255 [+]
osa-MIR395iChr8: 3299319-3299417 [+]
osa-MIR395jChr8: 3299479-3299590 [+]
osa-MIR395kChr8: 3299652-3299750 [+]
osa-MIR395yChr8: 3299815-3299924 [+]
osa-MIR395lChr8: 3299997-3300090 [+]
Database links

Mature sequence osa-miR395i

Accession MIMAT0000964

69 - 


 - 89

Get sequence
Deep sequencing39 reads, 2 experiments
Evidence by similarity; MI0001007
Database links


PMID:16117853 "Molecular evolution of the rice miR395 gene family" Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L Cell Res. 15:631-638(2005).