Stem-loop sequence osa-MIR399e

Accession

MI0001057 (change log)

Description

Oryza sativa miR399e stem-loop

Gene family

MIPF0000015; MIR399

Literature search

58 open access papers mention osa-MIR399e
(227 sentences)

Stem-loop

   aca      a c   ug       c         uuc    c  ca  --       ug 
5'    ugcauu c ggg  agucuuc uuggcagug   gaau gg  gu  accgguc  c
      |||||| | |||  ||||||| |||||||||   |||| ||  ||  |||||||  a
3'    acguaa g ccc  uuagagg aaccgucgc   cuug cc  ua  uggcuag  a
   uca      c a   gu       a         -ca    a  ac  ac       ug 

Deep sequencing

8 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Comments

This sequence belongs to the miR399 family of miRNAs, which are predicted to target mRNAs coding for a phosphatase transporter [1].

Genome context

• Coordinates (MSU7): Chr1: 30477612-30477729 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from osa-MIR399e

• osa-MIR399a: Chr1: 30478636-30478784 [+]
• osa-MIR399e: Chr1: 30477612-30477729 [-]

Database links

• miRBase Tracker:MI0001057

Mature sequence osa-miR399e

• Accession: MIMAT0000988
• Sequence: 88 - ugccaaaggagauuugcccag - 108
• Deep sequencing: 7 reads, 2 experiments
• Evidence: by similarity; MI0001020

References

1. PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" Jones-Rhoades MW, Bartel DP Mol Cell. 14:787-799(2004).