Stem-loop ath-MIR406

Accession

MI0001078

Description

Arabidopsis thaliana ath-MIR406 precursor miRNA

Literature search

1 open access papers mention ath-MIR406
(1 sentences)

Sequence

uaaagucuuaauuuuuaguuaucacgauuuagcacauaucaaucuauagauuugauuuuucuuuuauuaguucuuaaauuuugauuugagacaguaacuauucaaaUAGAAUGCUAUUGUAAUCCAGaauccgaaagaaacgaaucaaaaaaaaaaaaaacgagucuucauaguaaaaaucgauuaacuaaaaaggaugg
....((((...((((((((((...((((((.............(((((((((((.(((((.((((.((.((((.....(((((((((((.((((((..(((((.....))))).))))))..))..)))).))))).....)))).)).)))).))))).)))))))..))))...))))))..))))))))))))))..

Structure

uaaa    uaa          uca      agcacauaucaau    --       a     c    a  a    uuaaa     -    --  -g      ac     a 
    gucu   uuuuuaguua   cgauuu             cuau  agauuug uuuuu uuuu uu guuc     uuuug auuu  ga  acagua  uauuc a
    ||||   ||||||||||   ||||||             ||||  ||||||| ||||| |||| || ||||     ||||| ||||  ||  ||||||  ||||| a
    uagg   aaaaaucaau   gcuaaa             gaua  ucugagc aaaaa aaaa aa uaag     aaagc uaaG  CU  UGUUAU  GUAAG U
--gg    ---          -ua      ----------aau    cu       a     a    a  c    caaag     c    AC  AA      -C     A 

Annotation confidence Not enough data

Genome context

chr1: 19430078-19430277 [-]

Mature ath-miR406

• Accession: MIMAT0001009
• Description: Arabidopsis thaliana ath-miR406 mature miRNA
• Sequence: 107 - UAGAAUGCUAUUGUAAUCCAG - 127
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15258262
   Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
   "Sunkar R, Zhu JK"
   "Plant Cell (2004) 16:2001-2019