Stem-loop sequence ath-MIR156g

AccessionMI0001082 (change log)
DescriptionArabidopsis thaliana miR156g stem-loop
Gene family MIPF0000008; MIR156
Literature search

79 open access papers mention ath-MIR156g
(755 sentences)

Stem-loop 
   auaacga   c    -               a  u    cuuu   u     g 
5'        agg gaca gaagagagugagcac ca ggcu    uuc agcau c
          ||| |||| ||||||||||||||| || ||||    ||| |||||  
3'        ucc cugu cuucucucauucgug gu ucga    aag ucgua u
   ucucucg   u    u               c  c    ----   c     c
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Confidence Annotation confidence: not enough data
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Comments

This sequence is a predicted paralogue of the previously identified miR156 family [1], subsequently verified in [2]. It is predicted to target mRNAs coding for Squamosa-promoter Binding Protein (SBP)-like transcription factors.

Genome context
Coordinates (TAIR10; GCA_000001735.1) Overlapping transcripts
chr2: 8412516-8412618 [-]
intergenic
Database links

Mature sequence ath-miR156g

Accession MIMAT0001012
Sequence

11 -  

cgacagaagagagugagcac

 - 30

Get sequence
Evidence experimental; 454 [2], Illumina [3]

References

1
PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" Jones-Rhoades MW, Bartel DP Mol Cell. 14:787-799(2004).
2
PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
3
PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW J Exp Bot. 61:165-177(2010).