Stem-loop sequence ath-MIR164c

Accession

MI0001087 (change log)

Description

Arabidopsis thaliana miR164c stem-loop

Gene family

MIPF0000045; MIR164

Literature search

43 open access papers mention ath-MIR164c
(251 sentences)

Stem-loop

   ua    u  a     a  c              cacaaaugaaaucgauc 
5'   acac ug uggag ag agggcacgugcgaa                 g
     |||| || ||||| || ||||||||||||||                  
3'   ugug ac accuc uc ucuugugcacgcuu                 g
   uc    c  a     a  a              uuauacuaguuguucau 

Confidence

Annotation confidence: not enough data

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Comments

This sequence is a predicted paralogue of the previously identified miR164 family [1]. It is predicted to target mRNAs coding for NAC domain transcription factors.

Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr5: 9852674-9852775 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000066C26A_3702
• miRBase Tracker:MI0001087

Mature sequence ath-miR164c-5p

• Accession: MIMAT0001017
• Previous IDs: ath-miR164c
• Sequence: 11 - uggagaagcagggcacgugcg - 31
• Evidence: experimental; 454 [2], Illumina [3]

Mature sequence ath-miR164c-3p

• Accession: MIMAT0031916
• Sequence: 74 - cacguguucuacuacuccaac - 94
• Evidence: not experimental

References

1. PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" Jones-Rhoades MW, Bartel DP Mol Cell. 14:787-799(2004).
2. PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
3. PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW J Exp Bot. 61:165-177(2010).