Stem-loop sequence ath-MIR172e

AccessionMI0001089 (change log)
DescriptionArabidopsis thaliana miR172e stem-loop
Gene family MIPF0000035; MIR172
Literature search

54 open access papers mention ath-MIR172e
(289 sentences)

Stem-loop 
   guaguc  a         c           a  aga    u  uu     ---   -uu   c 
5'       gc gaugcagca cauuaagauuc ca   gaug gg  cccuu   ugc   ucg c
         || ||||||||| ||||||||||| ||   |||| ||  |||||   |||   ||| u
3'       cg cuacgucgu guaguucuaag gu   cuau cc  gggaa   acg   agc c
   cauaaa  a         a           g  gag    u  uu     aag   ccu   u
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Confidence Annotation confidence: not enough data
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Comments

This sequence is a predicted paralogue of the previously identified miR172 family [1]. It is predicted to target mRNAs coding for APETALA2-like transcription factors.

Genome context
Coordinates (TAIR10; GCA_000001735.1) Overlapping transcripts
chr5: 23988472-23988596 [+]
intergenic
Database links

Mature sequence ath-miR172e-5p

Accession MIMAT0031918
Sequence

13 -  

gcagcaccauuaagauucac

 - 32

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Evidence not experimental

Mature sequence ath-miR172e-3p

Accession MIMAT0001019
Previous IDsath-miR172e
Sequence

95 -  

ggaaucuugaugaugcugcau

 - 115

Get sequence
Evidence experimental; 5'RACE [2], 454 [3], Illumina [4]

References

1
PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" Jones-Rhoades MW, Bartel DP Mol Cell. 14:787-799(2004).
2
PMID:16040653 "Expression of Arabidopsis MIRNA genes" Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC Plant Physiol. 138:2145-2154(2005).
3
PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
4
PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW J Exp Bot. 61:165-177(2010).