Stem-loop sequence osa-MIR159b

Accession

MI0001093 (change log)

Description

Oryza sativa miR159b stem-loop

Gene family

MIPF0000010; MIR159

Literature search

77 open access papers mention osa-MIR159b
(356 sentences)

Stem-loop

        u  a ug            u     u  aa    uaucug    -  -   a a   g    u     guuc    uau        aua 
5' gguua ga g  gagcuccuuucg uccaa ga  gguu      aagg gu gau c gcu cuug ucaug    ccac   ucuaucuc   g
   ||||| || |  |||||||||||| ||||| ||  ||||      |||| || ||| | ||| |||| |||||    ||||   ||||||||   g
3' cuagu cu c  cucgagggaagu agguu cu  ccag      uucc ca cua g cga gaac aguac    ggug   ggauagag   a
        u  a gu            u     u  ca    ---ucg    u  a   a c   g    c     guuu    uuc        aaa 

Deep sequencing

2511 reads, 1.2e+03 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Comments

This sequence is a predicted paralogue of the previously identified miR159/JAW family [1]. It is predicted to target mRNAs coding for MYB and TCP transcription factors.

Genome context

• Coordinates (MSU7): Chr1: 1215030-1215217 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001093

Mature sequence osa-miR159b

• Accession: MIMAT0001023
• Sequence: 158 - uuuggauugaagggagcucug - 178
• Deep sequencing: 2239 reads, 2 experiments
• Evidence: by similarity; MI0000189
• Database links:
  • RNAcentral:URS000035D5E3_39947

References

1. PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" Jones-Rhoades MW, Bartel DP Mol Cell. 14:787-799(2004).