Stem-loop osa-MIR164d

Accession

MI0001104

Description

Oryza sativa osa-MIR164d precursor miRNA

Gene family

MIPF0000045; MIR164

Literature search

68 open access papers mention osa-MIR164d
(301 sentences)

Sequence

3185 reads, 2213 reads per million, 2 experiments

caaaccgugcUGGAGAAGCAGGGCACGUGCUcgacggcggggcuggcuggccggccggcuugcagcaugugcgcuccuucuccagcauggcuuc
....((((((((((((((.((.((((((((((((((((.((.(.....).)).))))..))).))))))))).)).))))))))))))))....

Structure

caaa              C  G         -   --    g  g u 
    ccgugcUGGAGAAG AG GCACGUGCU cga  cggc gg c g
    |||||||||||||| || ||||||||| |||  |||| || | g
    gguacgaccucuuc uc cguguacga guu  gccg cc g c
cuuc              c  g         c   cg    g  g u 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR164 family [1]. It is predicted to target mRNAs coding for NAC domain transcription factors.

Genome context

Chr2: 33143567-33143660 [-]

Mature osa-miR164d

• Accession: MIMAT0001034
• Description: Oryza sativa osa-miR164d mature miRNA
• Sequence: 11 - UGGAGAAGCAGGGCACGUGCU - 31
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799