Stem-loop osa-MIR164e

Accession

MI0001105

Description

Oryza sativa osa-MIR164e precursor miRNA

Gene family

MIPF0000045; MIR164

Literature search

69 open access papers mention osa-MIR164e
(319 sentences)

Sequence

2728 reads, 1894 reads per million, 2 experiments

uugugcagggUGGAGAAGCAGGGCACGUGAGcggccauccaguguagcuucgcugcgcguccauggcggcgaacgcgcgugaucuggaguuuggauggucguucauguguccgucuucuccaccgagcacug
..((((..((((((((((..((((((((((((((((((((((..(((..((((.((((((((.....))...)))))))))).)))....))))))))))))))))))))))..))))))))))..))))..

Structure

uu    ag          CA                      --ug   cu    u      ---  a 
  gugc  ggUGGAGAAG  GGGCACGUGAGcggccauccag    uag  ucgc gcgcgu   cc u
  ||||  ||||||||||  ||||||||||||||||||||||    |||  |||| ||||||   || g
  cacg  ccaccucuuc  ccuguguacuugcugguagguu    guc  agug cgcgca   gg g
gu    ag          ug                      ugag   -u    -      agc  c 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR164 family [1]. It is predicted to target mRNAs coding for NAC domain transcription factors.

Genome context

Chr3: 10542157-10542288 [+]

Mature osa-miR164e

• Accession: MIMAT0001035
• Description: Oryza sativa osa-miR164e mature miRNA
• Sequence: 11 - UGGAGAAGCAGGGCACGUGAG - 31
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799