miRBase entry: osa-MIR167g

Stem-loop osa-MIR167g


Accession
MI0001112
Description
Oryza sativa osa-MIR167g precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
82 open access papers mention osa-MIR167g
(247 sentences)

Sequence

81227 reads, 56505 reads per million, 2 experiments
cauaagcaggUGAAGCUGCCAGCAUGAUCUGaaagcaucucaaaccagcgaucagaucauccggcagcuucaucuucucaug
(((.((.(((((((((((((.(.(((((((((..((...........))..)))))))))).))))))))))))).)).)))

Structure
   a  c             A C         aa  aucu 
cau ag aggUGAAGCUGCC G AUGAUCUGa  gc    c
||| || ||||||||||||| | |||||||||  ||    a
gua uc ucuacuucgacgg c uacuagacu  cg    a
   c  u             c -         ag  acca 


Annotation confidence High
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Comments
This sequence is a predicted paralogue of the previously identified miR167 family [1]. It is predicted to target mRNAs coding for Auxin Response Factors (ARF transcription factors).

Genome context
Chr3: 3347682-3347763 [+]

Database links

Mature osa-miR167g

Accession MIMAT0001042
Description Oryza sativa osa-miR167g mature miRNA
Sequence 11 - UGAAGCUGCCAGCAUGAUCUG - 31
Evidence not_experimental
Database links

References

  1. PubMed ID: 15200956
    Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    "Jones-Rhoades MW, Bartel DP"
    "Mol Cell (2004) 14:787-799