Stem-loop sequence osa-MIR164f

Accession

MI0001159 (change log)

Description

Oryza sativa miR164f stem-loop

Gene family

MIPF0000045; MIR164

Literature search

67 open access papers mention osa-MIR164f
(282 sentences)

Stem-loop

   ----  ag au         c   a          c               cua a  uuc    -     cc    cg            cacuc   -     - c  c 
5'     ug  g  ggcgaggcg gcg gguggagaag agggcacgugcauuc   g gc   cguc cagcu  ccgg  ggcuagcuagcu     cgc cgccg c gc g
       ||  |  ||||||||| ||| |||||||||| |||||||||||||||   | ||   |||| |||||  ||||  ||||||||||||     ||| ||||| | ||  
3'     ac  c  ccgcuccgc cgu ccaccucuuc ucccguguacguagg   c cg   guag gucgg  ggcc  ucggucggucgg     gcg gcggc g cg c
   agga  ga gu         a   g          u               --- a  uac    a     cc    --            --cac   c     c c  c 

Deep sequencing

3044 reads, 1.9e+03 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr5: 23343908-23344117 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001159

Mature sequence osa-miR164f

• Accession: MIMAT0001089
• Sequence: 24 - uggagaagcagggcacgugca - 44
• Deep sequencing: 3032 reads, 2 experiments
• Evidence: by similarity; MI0000198
• Database links:
  • RNAcentral:URS00001A00F8_39947

References

1. PMID:15685364 "Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa" Li Y, Li W, Jin YX Acta Biochim Biophys Sin (Shanghai). 37:75-87(2005).