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miRBase |
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Stem-loop sequence gga-mir-29a |
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Accession | MI0001166 (change log) | |||||
Description | Gallus gallus miR-29a stem-loop | |||||
Gene family | MIPF0000009; mir-29 | |||||
Literature search |
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16 open access papers mention gga-mir-29a | |||||
Stem-loop |
a uu agagg uuu c ucaa 5' cccc u augacugauuuc ugguguu agag u |||| | |||||||||||| ||||||| |||| a 3' gggg a uauuggcuaaag accacga ucuu a a uu -guga uuu - uuau |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Comments |
This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken. |
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence gga-miR-29a-5p |
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Accession | MIMAT0026487 |
Sequence |
18 - cugauuucuuuugguguucaga - 39 |
Deep sequencing | 1647 reads, 5 experiments |
Evidence | experimental; Illumina [2] |
Database links |
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Predicted targets |
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Mature sequence gga-miR-29a-3p |
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Accession | MIMAT0001096 |
Sequence |
55 - uagcaccauuugaaaucgguu - 75 |
Deep sequencing | 70772 reads, 5 experiments |
Evidence | experimental; Illumina [2] |
Database links |
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Predicted targets |
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References |
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1 |
PMID:15592404
"Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
Nature. 432:695-716(2004).
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2 |
PMID:23034410
"Birth and expression evolution of mammalian microRNA genes"
Genome Res. 23:34-45(2013).
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