miRBase entry: gga-let-7b

Stem-loop gga-let-7b

Accession

MI0001172

Description

Gallus gallus gga-let-7b precursor miRNA

Literature search

103 open access papers mention gga-let-7b
(533 sentences)

Sequence

4967409 reads, 3252.0 reads per million, 260 experiments

caggaUGAGGUAGUAGGUUGUGUGGUUUcaggguagugauuuugccccaaucaggagauaaCUAUACAACCUACUGCCUUCCcug
((((..(((((((((((((((((((((...((((((.....))))))..(((....)))))))))))))))))))))))).))))

Structure

    aU                     ---------Uca      u 
cagg  GAGGUAGUAGGUUGUGUGGUU            ggguag g
||||  |||||||||||||||||||||            |||||| a
gucC  UUCCGUCAUCCAACAUAUCaa            cccguu u
    -C                     uagaggacuaac      u

Annotation confidence High

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Genome context

1: 71282596-71282680 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-let-7b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature gga-let-7b-5p

Accession	MIMAT0001102
Description	Gallus gallus gga-let-7b-5p mature miRNA
Sequence	6 - UGAGGUAGUAGGUUGUGUGGUUU - 28
Evidence	experimental cloned [2]
Database links
Predicted targets

Mature gga-let-7b-3p

Accession	MIMAT0061065
Description	Gallus gallus gga-let-7b-3p mature miRNA
Sequence	62 - CUAUACAACCUACUGCCUUCC - 82
Evidence	experimental cloned [2]

References

PubMed ID: 15592404
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
"International Chicken Genome Sequencing Consortium"
"Nature (2004) 432:695-716

"McBride D, Carre W, Law A, Clinton M"
(None) None: