miRBase entry: gga-mir-99a

Stem-loop gga-mir-99a


Accession
MI0001173
Description
Gallus gallus gga-mir-99a precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
8 open access papers mention gga-mir-99a
(19 sentences)

Sequence

180075 reads, 2162 reads per million, 5 experiments
ccaauuggcauaAACCCGUAGAUCCGAUCUUGUGuugaaaugcacugcaCAAGCUCGCUUCUAUGGGUCUgugucaguaug
...(((((((((.(((((((((..(((.(((((((...........))))))).)))..))))))))).)))))))))...

Structure
cca         A         UC   U       ugaa 
   auuggcaua ACCCGUAGA  CGA CUUGUGu    a
   ||||||||| |||||||||  ||| |||||||    u
   ugacugugU UGGGUAUCU  GCU GAACacg    g
gua         C         UC   C       ucac 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr1: 99018041-99018121 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-99a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-99a-5p

Accession MIMAT0001103
Description Gallus gallus gga-miR-99a-5p mature miRNA
Sequence 13 - AACCCGUAGAUCCGAUCUUGUG - 34
Evidence experimental
cloned [2]
Database links
Predicted targets

Mature gga-miR-99a-3p

Accession MIMAT0006781
Description Gallus gallus gga-miR-99a-3p mature miRNA
Sequence 50 - CAAGCUCGCUUCUAUGGGUCU - 70
Evidence experimental
cloned [3]

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716


  2. "McBride D, Carre W, Law A, Clinton M"
    (None) None:

  3. PubMed ID: 18511220
    Identification of novel chicken microRNAs and analysis of their genomic organization
    "Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH"
    "Gene (2008) 418:34-40