miRBase entry: gga-mir-20a

Stem-loop gga-mir-20a


Accession
MI0001181
Description
Gallus gallus gga-mir-20a precursor miRNA
Gene family
MIPF0000001; mir-17

Literature search
12 open access papers mention gga-mir-20a
(46 sentences)

Sequence

118203 reads, 1777 reads per million, 5 experiments
ugacagcucuuguagcacUAAAGUGCUUAUAGUGCAGGUAGuguucacuAAUCUACUGCAUUAUAAGCACUUAAAGUacugcuagcuguagaacuaca
..((((((...((((.(((.(((((((((((((((((.(((...........))))))))))))))))))))..))).)))).)))))).........

Structure
-------ug      cuu    c   -A                 G   uguu 
         acagcu   guag acU  AAGUGCUUAUAGUGCAG UAG    c
         ||||||   |||| |||  ||||||||||||||||| |||    a
         ugucga   cguc UGA  UUCACGAAUAUUACGUC AUC    c
acaucaaga      --u    a   AA                 -   UAAu 


Annotation confidence High
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Genome context
chr1: 148023499-148023596 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from gga-mir-20a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-20a-5p

Accession MIMAT0001111
Description Gallus gallus gga-miR-20a-5p mature miRNA
Sequence 19 - UAAAGUGCUUAUAGUGCAGGUAG - 41
Evidence experimental
cloned [2], Illumina [3]

Mature gga-miR-20a-3p

Accession MIMAT0026497
Description Gallus gallus gga-miR-20a-3p mature miRNA
Sequence 50 - AAUCUACUGCAUUAUAAGCACUUAAAGU - 77
Evidence experimental
Illumina [3]
Database links
Predicted targets

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716

  2. PubMed ID: 18256158
    MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
    "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
    "J Virol (2008) 82:4007-4015


  3. "McBride D, Carre W, Law A, Clinton M"
    (None) None:

  4. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45