miRBase entry: gga-mir-18a

Stem-loop gga-mir-18a


Accession
MI0001183
Description
Gallus gallus gga-mir-18a precursor miRNA
Gene family
MIPF0000001; mir-17

Literature search
11 open access papers mention gga-mir-18a
(20 sentences)

Sequence

8707 reads, 127 reads per million, 5 experiments
gugcuuuuuguacUAAGGUGCAUCUAGUGCAGAUAgugaaguagauuagcaucuACUGCCCUAAGUGCUCCUUCUGgcauaagaaguuauguc
((((.....)))).((((.((((.(((.((((.(((((..(.....)..)).))))))).))).)))).))))..(((((((....)))))))

Structure
------gugcuuuuuguacU    U    C   U    A   -  aa u 
                    AAGG GCAU UAG GCAG UAg ug  g a
                    |||| |||| ||| |||| ||| ||  | g
                    UUCC CGUG AUC CGUC Auc ac  u a
cuguauugaagaauacgGUC    U    A   C    -   u  ga u 


Annotation confidence High
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Genome context
chr1: 148023819-148023911 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from gga-mir-18a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-18a-5p

Accession MIMAT0001113
Description Gallus gallus gga-miR-18a-5p mature miRNA
Sequence 14 - UAAGGUGCAUCUAGUGCAGAUA - 35
Evidence experimental
cloned [2], Illumina [3]

Mature gga-miR-18a-3p

Accession MIMAT0026499
Description Gallus gallus gga-miR-18a-3p mature miRNA
Sequence 55 - ACUGCCCUAAGUGCUCCUUCUG - 76
Evidence experimental
Illumina [3]
Database links
Predicted targets

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716

  2. PubMed ID: 18256158
    MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
    "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
    "J Virol (2008) 82:4007-4015


  3. "McBride D, Carre W, Law A, Clinton M"
    (None) None:

  4. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45