Stem-loop gga-mir-187

Accession

MI0001193

Description

Gallus gallus gga-mir-187 precursor miRNA mir-187

Gene
family

RF00674; mir-187

Literature search

9 open access papers mention gga-mir-187
(18 sentences)

Sequence

223143 reads, 119.0 reads per million, 222 experiments

aaacuauugugagaccuccgGCUACAACACAGGACAUGGGAGcuuuucugaacccUCGUGUCUUGUGUUGCAGCCAGAggggcaca
.......((((...((((.((((.((((((((((((((((.(.((....)).).)))))))))))))))).)))).))))..))))

Structure

aaacuau    aga    c    A                A c  u 
       ugug   ccuc gGCU CAACACAGGACAUGGG G uu u
       ||||   |||| |||| |||||||||||||||| | ||  
       acac   ggAG CCGA GUUGUGUUCUGUGCUc c ag c
-------    -gg    A    C                c a  u 

Annotation confidence High

Genome context

2: 83234279-83234364 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-187

Mature gga-miR-187-5p

• Accession: MIMAT0026507
• Description: Gallus gallus gga-miR-187-5p mature miRNA
• Sequence: 21 - GCUACAACACAGGACAUGGGAG - 42
• Evidence: experimental ; Illumina [2]

Mature gga-miR-187-3p

• Accession: MIMAT0001124
• Description: Gallus gallus gga-miR-187-3p mature miRNA
• Sequence: 56 - UCGUGUCUUGUGUUGCAGCCAGA - 78
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


3. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45