miRBase entry: gga-mir-32

Stem-loop gga-mir-32


Accession
MI0001194
Description
Gallus gallus gga-mir-32 precursor miRNA
Gene family
MIPF0000069; mir-32

Literature search
4 open access papers mention gga-mir-32
(7 sentences)

Sequence

13705 reads, 255 reads per million, 5 experiments
ggagaUAUUGCACAUUACUAAGUUGCauguugucacggccucagugcAAUUUAGUGUGUGCGAUACUuuc
.(((.((((((((((.((((((((((((((((...))))....)))))))))))))))))))))))))..

Structure
-g   a          U            ----    u 
  gag UAUUGCACAU ACUAAGUUGCau    guug  
  ||| |||||||||| ||||||||||||    |||| c
  uUC AUAGCGUGUG UGAUUUAAcgug    cggc  
cu   -          -            acuc    a 


Annotation confidence High
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Comments
This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context
chr2: 84498503-84498572 [-]

Database links

Mature gga-miR-32-5p

Accession MIMAT0001125
Description Gallus gallus gga-miR-32-5p mature miRNA
Sequence 6 - UAUUGCACAUUACUAAGUUGC - 26
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature gga-miR-32-3p

Accession MIMAT0026508
Description Gallus gallus gga-miR-32-3p mature miRNA
Sequence 48 - AAUUUAGUGUGUGCGAUACU - 67
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45