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miRBase |
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Stem-loop sequence gga-mir-133a-1 |
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Accession | MI0001195 (change log) | |||||
Description | Gallus gallus miR-133a-1 stem-loop | |||||
Gene family | MIPF0000029; mir-133 | |||||
Literature search |
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26 open access papers mention gga-mir-133a-1 | |||||
Stem-loop |
- uuu a aa u a accuc 5' caaugc gcua agcuggu aa gg accaaauc u |||||| |||| ||||||| || || |||||||| 3' guuacg cgau ucgacca uu cc ugguuuag u a uau g ac c c guaac |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Comments |
This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken. |
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence gga-miR-133a-5p |
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Accession | MIMAT0026509 |
Sequence |
15 - agcugguaaaauggaaccaaauc - 37 |
Deep sequencing | 5934 reads, 5 experiments |
Evidence | experimental; Illumina [2] |
Database links |
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Predicted targets |
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Mature sequence gga-miR-133a-3p |
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Accession | MIMAT0001126 |
Sequence |
53 - uugguccccuucaaccagcugu - 74 |
Deep sequencing | 41156 reads, 5 experiments |
Evidence | experimental; Illumina [2] |
Database links |
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Predicted targets |
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References |
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1 |
PMID:15592404
"Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
Nature. 432:695-716(2004).
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2 |
PMID:23034410
"Birth and expression evolution of mammalian microRNA genes"
Genome Res. 23:34-45(2013).
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