Stem-loop sequence gga-mir-133a-1

Accession

MI0001195 (change log)

Description

Gallus gallus miR-133a-1 stem-loop

Gene family

MIPF0000029; mir-133

Literature search

26 open access papers mention gga-mir-133a-1
(118 sentences)

Stem-loop

   -      uuu    a       aa  u  a        accuc 
5'  caaugc   gcua agcuggu  aa gg accaaauc     u
    ||||||   |||| |||||||  || || ||||||||      
3'  guuacg   cgau ucgacca  uu cc ugguuuag     u
   a      uau    g       ac  c  c        guaac 

Deep sequencing

23548 reads, 80 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr2: 102812734-102812820 [-]
• Overlapping transcripts:

  antisense

  ENSGALT00000024152 ; MIB1-201; intron 12

Clustered miRNAs

< 10kb from gga-mir-133a-1

• gga-mir-1a-2: chr2: 102815860-102815944 [-]
• gga-mir-133a-1: chr2: 102812734-102812820 [-]

Database links

• EntrezGene:
• RNAcentral:URS000075C751_9031
• miRBase Tracker:MI0001195

Mature sequence gga-miR-133a-5p

• Accession: MIMAT0026509
• Sequence: 15 - agcugguaaaauggaaccaaauc - 37
• Deep sequencing: 5934 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00004AF952_9031
• Predicted targets:
  • TargetScanVert:gga-miR-133a-5p
  • miRDB:gga-miR-133a-5p

Mature sequence gga-miR-133a-3p

• Accession: MIMAT0001126
• Sequence: 53 - uugguccccuucaaccagcugu - 74
• Deep sequencing: 41156 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00004883E0_9031
• Predicted targets:
  • TargetScanVert:gga-miR-133a-3p
  • miRDB:gga-miR-133a-3p

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).