Stem-loop gga-mir-1a-2

Accession

MI0001196

Description

Gallus gallus gga-mir-1a-2 precursor miRNA

Literature search

27 open access papers mention gga-mir-1a-2
(200 sentences)

Sequence

26045345 reads, 18000.0 reads per million, 259 experiments

accugcucagagcACAUACUUCUUUAUGUACCCAUaugaacauacaaugcuaUGGAAUGUAAAGAAGUAUGUAUUuuuggcaggc
.((((((.((((.((((((((((((((((..(((((..(........)..))))).)))))))))))))))).)))).)))))).

Structure

a      c    c                AC     ug aca 
 ccugcu agag ACAUACUUCUUUAUGU  CCAUa  a   u
 |||||| |||| ||||||||||||||||  |||||  |    
 ggacgg uuUU UGUAUGAAGAAAUGUA  GGUau  u   a
c      u    A                -A     cg aac 

Annotation confidence High

Genome context

2: 102137096-102137180 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-1a-2

Mature gga-miR-1a-2-5p

• Accession: MIMAT0026510
• Description: Gallus gallus gga-miR-1a-2-5p mature miRNA
• Sequence: 14 - ACAUACUUCUUUAUGUACCCAU - 35
• Evidence: experimental ; Illumina [2]

Mature gga-miR-1a-3p

• Accession: MIMAT0001127
• Description: Gallus gallus gga-miR-1a-3p mature miRNA
• Sequence: 53 - UGGAAUGUAAAGAAGUAUGUAUU - 75
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45