Stem-loop sequence gga-mir-1a-2

Accession

MI0001196 (change log)

Previous IDs

gga-mir-1-2

Description

Gallus gallus miR-1a-2 stem-loop

Gene family

MIPF0000038; mir-1

Literature search

28 open access papers mention gga-mir-1a-2
(196 sentences)

Stem-loop

   a      c    c                ac     ugaaca 
5'  ccugcu agag acauacuucuuuaugu  ccaua      u
    |||||| |||| ||||||||||||||||  |||||       
3'  ggacgg uuuu uguaugaagaaaugua  gguau      a
   c      u    a                -a     cguaac 

Deep sequencing

9112918 reads, 9.64e+04 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr2: 102815860-102815944 [-]
• Overlapping transcripts:

  antisense

  ENSGALT00000024152 ; MIB1-201; intron 12

Clustered miRNAs

< 10kb from gga-mir-1a-2

• gga-mir-1a-2: chr2: 102815860-102815944 [-]
• gga-mir-133a-1: chr2: 102812734-102812820 [-]

Database links

• EntrezGene:
• RNAcentral:URS000075C46C_9031
• miRBase Tracker:MI0001196

Mature sequence gga-miR-1a-2-5p

• Accession: MIMAT0026510
• Sequence: 14 - acauacuucuuuauguacccaua - 36
• Deep sequencing: 6 reads, 1 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:gga-miR-1a-2-5p
  • miRDB:gga-miR-1a-2-5p

Mature sequence gga-miR-1a-3p

• Accession: MIMAT0001127
• Previous IDs: gga-miR-1
• Sequence: 53 - uggaauguaaagaaguaugua - 73
• Deep sequencing: 18225317 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS0000348947_9031
• Predicted targets:
  • TargetScanVert:gga-miR-1a-3p
  • miRDB:gga-miR-1a-3p

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).