miRBase entry: gga-mir-217

Stem-loop gga-mir-217


Accession
MI0001201
Description
Gallus gallus gga-mir-217 precursor miRNA
Gene family
MIPF0000077; mir-217

Literature search
7 open access papers mention gga-mir-217
(12 sentences)

Sequence

1464 reads, 57 reads per million, 5 experiments
aaagucacugcagaguucuugaugucgcagaUACUGCAUCAGGAACUGAUUGGAUaauaaucagucaCCAUCAGUUCCUAAUGCAUUGCCuucagcaucuaaacaag
.(((..(((....))).)))(((((.(.((.((.(((((.((((((((((.((((........))).).)))))))))).))))).)).)).).)))))........

Structure
aaagucacugcagaguucuu     c c  a  C     C          U -   aau 
                    gaugu g ag UA UGCAU AGGAACUGAU G GAU   a
                    ||||| | || || ||||| |||||||||| | |||    
                    cuacg c uC GU ACGUA UCCUUGACUA C cug   a
------------gaacaaau     a u  C  U     A          C a   acu 


Annotation confidence High
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Comments
This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context
chr3: 315408-315514 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from gga-mir-217
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-217-5p

Accession MIMAT0001132
Description Gallus gallus gga-miR-217-5p mature miRNA
Sequence 32 - UACUGCAUCAGGAACUGAUUGGAU - 55
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature gga-miR-217-3p

Accession MIMAT0026513
Description Gallus gallus gga-miR-217-3p mature miRNA
Sequence 68 - CCAUCAGUUCCUAAUGCAUUGCC - 90
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45