miRBase entry: gga-mir-194

Stem-loop gga-mir-194


Accession
MI0001202
Description
Gallus gallus gga-mir-194 precursor miRNA
Gene family
MIPF0000055; mir-194

Literature search
7 open access papers mention gga-mir-194
(114 sentences)

Sequence

174 reads, 4 reads per million, 5 experiments
uggugcucucauaUGUAACAGCAACUCCAUGUGGAcuacacugacuuccaguggagaugcuguuacuuuugauag
.....((.(((...(((((((((.((((((.((((...........)))))))))).)))))))))...))).))

Structure
uggug  c   uaU         A      G    cuac 
     cu uca   GUAACAGCA CUCCAU UGGA    a
     || |||   ||||||||| |||||| ||||    c
     ga agu   cauugucgu gaggug accu    u
-----  u   uuu         a      -    ucag 


Annotation confidence Not enough data
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Comments
This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context
chr3: 18822853-18822927 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-194
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-194

Accession MIMAT0001133
Description Gallus gallus gga-miR-194 mature miRNA
Sequence 14 - UGUAACAGCAACUCCAUGUGGA - 35
Evidence not_experimental

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716