Stem-loop sequence gga-mir-223

Accession

MI0001208 (change log)

Description

Gallus gallus miR-223 stem-loop

Gene family

MIPF0000067; mir-223

Literature search

17 open access papers mention gga-mir-223
(138 sentences)

Stem-loop

   ----cu   -    ag    gcgu              gaguuu       a u 
5'       gca gugc  cacu    guauuugacaagcu      gacacuc g c
         ||| ||||  ||||    ||||||||||||||      ||||||| | u
3'       cgu cacg  guga    cauaaacuguuuga      cugugag c g
   acgagu   u    ga    accc              ------       a g 

Deep sequencing

2305 reads, 0 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr4: 249565-249664 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:
• RNAcentral:URS000075D2F1_9031
• miRBase Tracker:MI0001208

Mature sequence gga-miR-223

• Accession: MIMAT0001140
• Sequence: 59 - ugucaguuugucaaauacccc - 79
• Deep sequencing: 2237 reads, 5 experiments
• Evidence: experimental; cloned [2]
• Database links:
  • RNAcentral:URS00000F11D1_9031
• Predicted targets:
  • TargetScanVert:gga-miR-223
  • miRDB:gga-miR-223

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2. " McBride D, Carre W, Law A, Clinton M Unpublished.