Stem-loop sequence gga-mir-302a

Accession

MI0001211 (change log)

Previous IDs

gga-mir-302

Description

Gallus gallus miR-302a stem-loop

Gene family

MIPF0000071; mir-302

Literature search

6 open access papers mention gga-mir-302a
(14 sentences)

Stem-loop

      ca   u         u ug   g    gu 
5' cca  acu aaaugugga g  cuu cuuu  u
   |||  ||| ||||||||| |  ||| ||||  c
3' ggu  uga uuuguaccu c  gaa gaaa  u
      ag   u         u gu   a    ag 

Deep sequencing

4 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr4: 57456844-57456910 [+]
• Overlapping transcripts:

  antisense

  ENSGALT00000019679 ; LARP7-201; intron 8

Clustered miRNAs

< 10kb from gga-mir-302a

• gga-mir-302b: chr4: 57456279-57456350 [+]
• gga-mir-302c: chr4: 57456541-57456605 [+]
• gga-mir-1811: chr4: 57456663-57456743 [+]
• gga-mir-302a: chr4: 57456844-57456910 [+]
• gga-mir-302d: chr4: 57457179-57457247 [+]
• gga-mir-367: chr4: 57457315-57457387 [+]

Database links

• EntrezGene:
• miRBase Tracker:MI0001211

Mature sequence gga-miR-302a

• Accession: MIMAT0001143
• Previous IDs: gga-miR-302
• Sequence: 43 - aagugcuuccauguuuuaguga - 64
• Evidence: by similarity; MI0000738
• Predicted targets:
  • TargetScanVert:gga-miR-302a
  • miRDB:gga-miR-302a

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).