miRBase entry: gga-mir-218-1

Stem-loop gga-mir-218-1


Accession
MI0001212
Description
Gallus gallus gga-mir-218-1 precursor miRNA
Gene family
MIPF0000026; mir-218

Literature search
4 open access papers mention gga-mir-218-1
(38 sentences)

Sequence

17319 reads, 197 reads per million, 5 experiments
ugauaauguagcgagauuuucugUUGUGCUUGAUCUAACCAUGUgguugugagguaugaguaaaaCAUGGUUCUGUCAAGCACCAUGgaacgucacgcagcuuucuaca
..........(((.(((.((((((.(((((((((..((((((((.....(.(....).).....))))))))..))))))))).)))))).))).)))...........

Structure
-ugauaaugua   a   u      U         CU        gguug g g 
           gcg gau uucugU GUGCUUGAU  AACCAUGU     u a g
           ||| ||| |||||| |||||||||  ||||||||     | |  
           cgc cug aagGUA CACGAACUG  UUGGUACa     a u u
acaucuuucga   a   c      C         UC        aaaug g a 


Annotation confidence High
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Genome context
chr4: 75581203-75581311 [-]

Database links

Mature gga-miR-218-5p

Accession MIMAT0001144
Description Gallus gallus gga-miR-218-5p mature miRNA
Sequence 24 - UUGUGCUUGAUCUAACCAUGU - 44
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature gga-miR-218-3p

Accession MIMAT0026518
Description Gallus gallus gga-miR-218-3p mature miRNA
Sequence 66 - CAUGGUUCUGUCAAGCACCAUG - 87
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716


  2. "McBride D, Carre W, Law A, Clinton M"
    (None) None:

  3. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45