Stem-loop gga-mir-10b

Accession

MI0001216

Description

Gallus gallus gga-mir-10b precursor miRNA

Literature search

18 open access papers mention gga-mir-10b
(53 sentences)

Sequence

1053744 reads, 14127 reads per million, 5 experiments

cagaacguuauuacguugucuauauaUACCCUGUAGAACCGAAUUUGUgugauauucauauagucacAGAUUCGAUUCUAGGGGAAUAuauggucgaugcaaaaacuuca
..(((.(((.((.(((((.((((((((.((((.(((((.((((((((((...(((....)))..)))))))))).))))))))).)))))))).))))).)).)))))).

Structure

ca   c   a  a     u        A    G     C          uga   u 
  gaa guu uu cguug cuauauaU CCCU UAGAA CGAAUUUGUg   uau c
  ||| ||| || ||||| |||||||| |||| ||||| ||||||||||   |||  
  cuu caa aa guagc gguauAUA GGGG AUCUU GCUUAGAcac   aua a
-a   -   a  c     u        A    -     A          -ug   u 

Annotation confidence Low

Genome context

chr7: 16343590-16343699 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-10b

Mature gga-miR-10b-5p

• Accession: MIMAT0001148
• Description: Gallus gallus gga-miR-10b-5p mature miRNA
• Sequence: 27 - UACCCUGUAGAACCGAAUUUGU - 48
• Evidence: experimental ; Illumina [2]

Mature gga-miR-10b-3p

• Accession: MIMAT0026521
• Description: Gallus gallus gga-miR-10b-3p mature miRNA
• Sequence: 68 - AGAUUCGAUUCUAGGGGAAUA - 88
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


3. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45