miRBase entry: gga-mir-128-1

Stem-loop gga-mir-128-1


Accession
MI0001217
Description
Gallus gallus gga-mir-128-1 precursor miRNA
Gene family
MIPF0000048; mir-128

Literature search
10 open access papers mention gga-mir-128-1
(42 sentences)

Sequence

93956 reads, 1024 reads per million, 5 experiments
ugagcuguugaauuCGGGGCCGUAACACUGUCUGAGAgguuuauauuucUCACAGUGAACCGGUCUCUUUuucagcugcuuc
.((((.((((((...(((((((...((((((..(((((((....)))))))))))))...)))))))...)))))).)))).

Structure
u    u      uuC       UAA      CU       u 
 gagc guugaa   GGGGCCG   CACUGU  GAGAggu u
 |||| ||||||   |||||||   ||||||  |||||||  
 uucg cgacuu   CUCUGGC   GUGACA  CUcuuua a
c    u      UUU       CAA      --       u 


Annotation confidence High
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Genome context
chr7: 30766323-30766404 [+]

Database links

Mature gga-miR-128-3p

Accession MIMAT0001123
Description Gallus gallus gga-miR-128-3p mature miRNA
Sequence 50 - UCACAGUGAACCGGUCUCUUU - 70
Evidence experimental
cloned [2], Northern [2], Illumina [3]
Database links
Predicted targets

Mature gga-miR-128-1-5p

Accession MIMAT0031096
Description Gallus gallus gga-miR-128-1-5p mature miRNA
Sequence 15 - CGGGGCCGUAACACUGUCUGAGA - 37
Evidence experimental
Illumina [3]

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716


  2. "McBride D, Carre W, Law A, Clinton M"
    (None) None:

  3. PubMed ID: 16750530
    Identification of microRNAs from different tissues of chicken embryo and adult chicken
    "Xu H, Wang X, Du Z, Li N"
    "FEBS Lett (2006) 580:3610-3616

  4. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45