miRBase entry: gga-mir-190a

Stem-loop gga-mir-190a


Accession
MI0001224
Description
Gallus gallus gga-mir-190a precursor miRNA
Gene family
MIPF0000076; mir-190

Literature search
3 open access papers mention gga-mir-190a
(3 sentences)

Sequence

9571 reads, 128 reads per million, 5 experiments
ugcaggacucugugUGAUAUGUUUGAUAUAUUAGGUuguuauuuaauccaaCUAUAUAUCAAACAUAUUCCUacaguguccugcc
.(((((((.(((((.((((((((((((((((..(((((..........)))))))))))))))))))))..))))).))))))).

Structure
u       u     -U                UA     uuau 
 gcaggac cugug  GAUAUGUUUGAUAUAU  GGUug    u
 ||||||| |||||  ||||||||||||||||  |||||     
 cguccug gacaU  UUAUACAAACUAUAUA  UCaac    u
c       u     CC                --     cuaa 


Annotation confidence High
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Genome context
chr10: 4206001-4206085 [-]

Database links

Mature gga-miR-190a-5p

Accession MIMAT0001155
Description Gallus gallus gga-miR-190a-5p mature miRNA
Sequence 15 - UGAUAUGUUUGAUAUAUUAGGU - 36
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature gga-miR-190a-3p

Accession MIMAT0026525
Description Gallus gallus gga-miR-190a-3p mature miRNA
Sequence 52 - CUAUAUAUCAAACAUAUUCCU - 72
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716


  2. "McBride D, Carre W, Law A, Clinton M"
    (None) None:

  3. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45