Stem-loop sequence gga-mir-204-2

Accession

MI0001225 (change log)

Description

Gallus gallus miR-204-2 stem-loop

Gene family

MIPF0000042; mir-204

Literature search

11 open access papers mention gga-mir-204-2
(22 sentences)

Stem-loop

   cuacu     ugugu   cug     u         ca    a     g aga 
5'      gagac     gac   ugggc ucccuuugu  uccu ugccu g   u
        |||||     |||   ||||| |||||||||  |||| ||||| |   c
3'      cucug     cug   acucg agggaaacg  aggg acgga u   a
   --cuu     -----   ucg     u         ac    -     g gac 

Deep sequencing

787 reads, 0 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr10: 5628577-5628677 [+]
• Overlapping transcripts:

  sense

  ENSGALT00000006114 ; TRPM1-201; intron 6

Clustered miRNAs

< 10kb from gga-mir-204-2

• gga-mir-1574: chr10: 5628304-5628377 [+]
• gga-mir-204-2: chr10: 5628577-5628677 [+]

Database links

• EntrezGene:
• RNAcentral:URS000075BD45_9031
• miRBase Tracker:MI0001225

Mature sequence gga-miR-204

• Accession: MIMAT0001156
• Sequence: 27 - uucccuuugucauccuaugccu - 48
• Deep sequencing: 1561 reads, 5 experiments
• Evidence: by similarity; MI0000284
• Database links:
  • RNAcentral:URS000029D9F1_9031
• Predicted targets:
  • TargetScanVert:gga-miR-204
  • miRDB:gga-miR-204

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).