miRBase entry: gga-let-7g

Stem-loop gga-let-7g


Accession
MI0001230
Description
Gallus gallus gga-let-7g precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
46 open access papers mention gga-let-7g
(227 sentences)

Sequence

295864 reads, 4570 reads per million, 5 experiments
aggcUGAGGUAGUAGUUUGUACAGUuugagggucuaugauaccacccgguacaggagauaaCUGUACAGGCCACUGCCUUGCC
.(((.((((((((.((((((((((((.....((((.((.((((....))))))..)))))))))))))))).)))))))))))

Structure
a   U        A            ugagg    -a  a    a 
 ggc GAGGUAGU GUUUGUACAGUu     gucu  ug uacc c
 ||| |||||||| ||||||||||||     ||||  || ||||  
 CCG UUCCGUCA CGGACAUGUCaa     uaga  ac augg c
-   -        C            -----    gg  -    c 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr12: 2971911-2971993 [-]

Database links

Mature gga-let-7g-5p

Accession MIMAT0001160
Description Gallus gallus gga-let-7g-5p mature miRNA
Sequence 5 - UGAGGUAGUAGUUUGUACAGU - 25
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature gga-let-7g-3p

Accession MIMAT0026527
Description Gallus gallus gga-let-7g-3p mature miRNA
Sequence 62 - CUGUACAGGCCACUGCCUUGCC - 83
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716


  2. "McBride D, Carre W, Law A, Clinton M"
    (None) None:

  3. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45