miRBase entry: gga-let-7d

Stem-loop gga-let-7d


Accession
MI0001232
Description
Gallus gallus gga-let-7d precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
48 open access papers mention gga-let-7d
(229 sentences)

Sequence

10527 reads, 130 reads per million, 5 experiments
auugggcuccuaggaAGAGGUAGUGGGUUGCAUAGUuuuagggcagggauuuugcucacaaggagguaacuauacaaccugcugccuuucuuagggcuuuauu
...((((.(((((((.((((((((((((((.((((((...((((((.....))))))..........)))))).)))))))))))))))))))))))))....

Structure
-auu    u       A              C      -------uua      g 
    gggc ccuagga GAGGUAGUGGGUUG AUAGUu          gggcag g
    |||| ||||||| |||||||||||||| ||||||          |||||| a
    uucg ggauucu uuccgucguccaac uaucaa          cucguu u
uuau    -       -              a      uggaggaaca      u 


Annotation confidence High
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Comments
This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context
chr12: 6091058-6091160 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from gga-let-7d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-let-7d

Accession MIMAT0001161
Description Gallus gallus gga-let-7d mature miRNA
Sequence 16 - AGAGGUAGUGGGUUGCAUAGU - 36
Evidence not_experimental

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716